Not necessarily. The West Island Highway and the Yangshan Deepwater Port are two separate and independent shipping routes.
The West Island Highway connects Hong Kong’s western districts to Macau, while the Yangshan Deepwater Port is a major container port in Shanghai. If you’re taking your boat from the West Island Highway (Xi Ti Ma Dao), it would not pass through Guangzhou Tower (Canton Tower) because they are not connected.
The tower itself is located on Shamian Island in Guangzhou’s Liwan District, quite far from the shipping routes mentioned above.